Evaluating the Relationship Between Running Times and DNA Sequence Sizes using a Generic-Based Filtering Program

نویسنده

  • O. O. Oluwagbemi
چکیده

Generic programming depends on the decomposition of programs into simpler components which may be developed separately and combined arbitrarily, subject only to welldefined interfaces. Bioinformatics deals with the application of computational techniques to data present in the Biological sciences. A genetic sequence is a succession of letters which represents the basic structure of a hypothetical DNA molecule, with the capacity to carry information. This research article studied the relationship between the running times of a generic-based filtering program and different samples of genetic sequences in an increasing order of magnitude. A graphical result was obtained to adequately depict this relationship. It was also discovered that the complexity of the generic tree program was O (log2 N). This research article provided one of the systematic approaches of generic programming to Bioinformatics, which could be instrumental in elucidating major discoveries in Bioinformatics, as regards efficient data management and analysis. (

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Mitochondrial DNA sequence-based phylogenetic relationship of Trichiurus lepturus (Perciformes: Trichiuridae) from the Persian Gulf

In this study, mitochondrial DNA analysis using 16S ribosomal DNA (rDNA) was performed to investigate the phylogeny relationship of Trichiurus lepturus in the Persian Gulf compared to the other investigated area. The amplification of 16S rDNA resulted in a product of 600 bp in all samples. The results showed that the isolated strain belongs to T. lepturus showing 42 divergence sites among the s...

متن کامل

Meta heuristic for Minimizing Makespan in a Flow-line Manufacturing Cell with Sequence Dependent Family Setup Times

This paper presents a new mathematical model for the problem of scheduling part families and jobs within each part family in a flow line manufacturing cell where the setup times for each family are sequence dependent and it is desired to minimize the maximum completion time of the last job on the last machine (makespan) while processing parts (jobs) in each family together. Gaining an optimal s...

متن کامل

A preliminary study on phylogenetic relationship between five sturgeon species in the Iranian Coastline of the Caspian Sea

The phylogenetic relationship of five sturgeon species in the South Caspian Sea was investigated using mtDNA molecule. Sequence analysis of mtDNA D-loop region of five sturgeon species [Great sturgeon (Huso huso), Russian sturgeon (Acipenser gueldenstaedtii), Persian sturgeon (Acipenser persicus), Ship sturgeon (Acipenser nudiventris), Stellate sturgeon (Acipenser stellatus)] and DNA sequencing...

متن کامل

A preliminary study on phylogenetic relationship between five sturgeon species in the Iranian Coastline of the Caspian Sea

The phylogenetic relationship of five sturgeon species in the South Caspian Sea was investigated using mtDNA molecule. Sequence analysis of mtDNA D-loop region of five sturgeon species [Great sturgeon (Huso huso), Russian sturgeon (Acipenser gueldenstaedtii), Persian sturgeon (Acipenser persicus), Ship sturgeon (Acipenser nudiventris), Stellate sturgeon (Acipenser stellatus)] and DNA sequencing...

متن کامل

Genotyping of Candida albicans isolated from animals using 25S ribosomal DNA and ALT repeats polymorphism in repetitive sequence

Background and Purpose: Candida albicans is the most prevalent Candida species isolated from animals. Candidiasis can be systemic in animals or may affect a single organ, such as the mouth, urinary tract, and skin. The aim of the present study was to determine the genetic diversity of C. albicans isolated from different animals and investigate the presence of a relationship between host specifi...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2008